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PUBLICATIONS

  • Characterizing spatial epidemiology in a heterogeneous transmission landscape using the spatial transmission count statistic

    Communications Medicine
    May 2025
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    Background Viral genomes contain records of geographic movements and cross-scale transmission dynamics. However, the impact of regional heterogeneity, particularly among rural and urban centers, on viral spread and epidemic trajectory has been less explored due to limited data availability. Intensive and widespread efforts to collect and sequence SARS-CoV-2 viral samples have enabled the development of comparative genomic approaches to reconstruct spatial transmission history
  • Receptor-binding specificity of a bovine influenza A virus

    Nature
    April 2025
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    Receptor-binding specificity of bovine H5N1
  • Neuraminidase-specific antibodies drive differential cross-protection between contemporary FLUBV lineages

    Science Advances
    March 2025
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    Neuraminidase-specific antibodies drive differential cross-protection between contemporary FLUBV lineages
  •  Estimating standard-dose and high-dose Fluzone vaccine efficacies for influenza A based on HAI titers

    The Journal of Infectious Diseases
    December 2024
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     Estimating standard-dose and high-dose Fluzone vaccine efficacies for influenza A based on HAI titers
  • Principles and therapeutic applications of adaptive immunity

    Cell Press
    April 2024
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    Major types of adaptive immune responses, including effector, memory, exhausted T cell, and regulatory T cell responses
  • Necroptosis blockade prevents lung injury in severe influenza

    Nature
    April 2024
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    Necroptosis blockade prevents lung injury in severe influenza
  • Flublok Quadrivalent Vaccine Adjuvanted with R-DOTAP Elicits a Robust and Multifunctional CD4 T Cell Response That Is of Greater Magnitude and Functional Diversity Than Conventional Adjuvant Systems

    MDPI
    March 2024
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    Subsets of vaccine-elicited CD4 T cells that expressed one or more cytokines
  • Assessment of Humoral Immune Responses to Repeated Influenza Vaccination in a Multiyear Cohort: A 5-Year Follow-up

    The Journal of Infectious Diseases
    February 2024
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    Assessment of Humoral Immune Responses to Repeated Influenza Vaccination in a Multiyear Cohort
  • A general computational design strategy for stabilizing viral class I fusion proteins

    Nature Communications
    February 2024
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    A general computational design strategy for stabilizing viral class I fusion proteins
  • Fitness Determinants of Influenza A Viruses

    viruses
    September 2023
  • Broad spectrum SARS-CoV-2-specific immunity in hospitalized First Nations peoples recovering from COVID-19

    Immunology & Cell Biology
    September 2023
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    Broad spectrum SARS-CoV-2-specific immunity in hospitalized First Nations peoples recovering from COVID-19
  • Pulmonary inflammation and fibroblast immunoregulation: from bench to bedside

    The Journal of Clinical Investigation
    September 2023
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    Pulmonary inflammation and fibroblast immunoregulation: from bench to bedside
  • Transcriptomic profiles of multiple organ dysfunction syndrome phenotypes in pediatric critical influenza

    Frontiers in Immunology
    July 2023
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    Transcriptomic profiles of multiple organ dysfunction syndrome phenotypes in pediatric critical influenza
  • Charting the spatial dynamics of early SARS-CoV-2 transmission in Washington state

    PLOS Computational Biology
    June 2023
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    Charting the spatial dynamics of early SARS-CoV-2 transmission in Washington state
  • Robust and prototypical immune responses toward COVID-19 vaccine in First Nations peoples are impacted by comorbidities

    Nature Immunology
    May 2023
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  • We need to keep an eye on avian influenza

    Nature Reviews Immunology
    March 2023
  • Comparing the transmission potential from sequence and surveillance data of 2009 North American influenza pandemic waves

    Infectious Disease Modelling
    March 2023
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  • Bordetella bronchiseptica-Mediated Interference Prevents Influenza A Virus Replication in the Murine Nasal Cavity

    ASM Journals
    February 2023
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  • Diversity and evolution of computationally predicted T cell epitopes against human respiratory syncytial virus

    PLOS Computational Biology
    January 2023
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    Diversity and evolution of computationally predicted T cell epitopes against human respiratory syncytial virus
  • H1N1 G4 swine influenza T cell epitope analysis in swine and human vaccines and circulating strains uncovers potential risk to swine and humans

    Influenza Other Respir Viruses
    October 2022
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    H1N1 G4 swine influenza T cell epitope analysis in swine and human vaccines and circulating strains uncovers potential risk to swine and humans
  • Containing novel SARS-CoV-2 variants at source is possible with high-intensity sequencing

    PNAS Nexus
    August 2022
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    Cider Publication Graphic
  • Maintenance and dissemination of avian-origin influenza A virus within the northern Atlantic Flyway of North America

    PLOS Pathogens
    June 2022
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    Maintenance and dissemination of avian-origin influenza A virus within the northern Atlantic Flyway of North America
  • Immunological heterogeneity informs estimation of the durability of vaccine protection

    J R Soc Interface
    May 2022
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    Immunological heterogeneity informs estimation of the durability of vaccine protection
  • Host diversity and behavior determine patterns of interspecies transmission and geographic diffusion of avian influenza A subtypes among North American wild reservoir species

    PLoS Pathogens
    April 2022
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    Host diversity and behavior determine patterns of interspecies transmission and geographic diffusion of avian influenza A subtypes among North American wild reservoir species
  • Dissecting recurrent waves of pertussis across the boroughs of London

    PLoS Computational Biology
    April 2022
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    Dissecting recurrent waves of pertussis across the boroughs of London
  • Transmission models indicate Ebola virus persistence in non-human primate populations is unlikely

    J R Soc Interface
    February 2022
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    Transmission models indicate Ebola virus persistence in non-human primate populations is unlikely
  • Development of a Mouse Model to Explore CD4 T Cell Specificity, Phenotype, and Recruitment to the Lung after Influenza B Infection

    Pathogens
    February 2022
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    Development of a Mouse Model to Explore CD4 T Cell Specificity, Phenotype, and Recruitment to the Lung after Influenza B Infection
  • Host Predictors of Broadly Cross-Reactive Antibodies Against Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants of Concern Differ Between Infection and Vaccination

    Clinical Infectious Diseases
    December 2021
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    Host Predictors of Broadly Cross-Reactive Antibodies Against Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants of Concern Differ Between Infection and Vaccination
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